Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs3731399 | chr11:125497247 | C/T | 4.72E-5 | 178 | 4.1 | 11.6 | 16.03 | KM Plot |
| PAAD | rs3731420 | chr11:125507219 | C/CTT | 4.72E-5 | 178 | 16.03 | 11.6 | 4.1 | KM Plot |
| PAAD | rs3731438 | chr11:125511213 | A/G | 4.72E-5 | 178 | 16.03 | 11.6 | 4.1 | KM Plot |
| PAAD | rs3732258 | chr2:70436551 | C/T | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs373419954 | chr1:227479258 | AAAACAAAAAC/A | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs3735866 | chr8:1820656 | G/T | 0.000136 | 174 | 16.27 | 13.13 | 7.77 | KM Plot |
| PAAD | rs373607814 | chr11:68485552 | G/C | 8.79E-10 | 178 | 15.57 | 14.2 | 2.2 | KM Plot |
| PAAD | rs373882888 | chr1:33746670 | AAACAAC/A | 4.58E-6 | 170 | 4.92 | 16.1 | 15.5 | KM Plot |
| PAAD | rs374469480 | chr1:227485113 | GACCC/G | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs374641749 | chr1:227597660 | CT/C | 6.68E-5 | 177 | 15.53 | 15.87 | 3.9 | KM Plot |
| PAAD | rs3747011 | chr21:48084628 | C/T | 4.63E-5 | 178 | 15.43 | 15.62 | 7.47 | KM Plot |
| PAAD | rs375460614 | chr1:227434083 | AACTC/A | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs3757508 | chr7:102936527 | G/T | 7.54E-8 | 176 | 3.43 | 12.5 | 16.17 | KM Plot |
| PAAD | rs376186463 | chr11:125733155 | G/C | 0.000122 | 174 | 15.95 | 12.2 | 4.1 | KM Plot |
| PAAD | rs376506673 | chr2:128564331 | TTA/T | 8.74E-10 | 177 | 15.57 | 12.6 | 2.2 | KM Plot |